According to the country's civil aviation authority, operations will resume at 5 PM UAE time on Friday.
On Thursday several UAE carriers were allowed to leave the country.
However the planes were flying without passengers with pilots only permitted to bring the aircraft safely home.
Air Arabia's flight G9825 was the first plane to leave Peshawar, bound for the emirate of Ras Al Khaimah.
Emirates flight EK637 also took off from the city, heading to Dubai.

Nine injured in attack in Taipei, media reports
Putin offers no compromise on Ukraine, says EU 'robbery' failed
Bangladesh rocked by unrest after death of student leader
Suspected gunman in Brown University shooting found dead
Ukraine's Zelenskyy meets Poland's Trump-backed president at key moment in war
No evidence alleged Bondi gunmen received military training in Philippines
At least 12 killed in Nigeria mining site attack
Russian attack on Ukraine's central Cherkasy injures six, causes blackouts
